Our Collection
  1. Abbas, Kaja, et al. "Computational epidemiology: Bayesian disease surveillance." Proc. of the International Conference on Bioinformatics and its Applications, FL, USA. 2004.
  2. Abramson, Joseph H. "WINPEPI (PEPI-for-Windows): computer programs for epidemiologists." Epidemiologic Perspectives & Innovations 1.1 (2004): 6.
  3. Ajelli, Marco, et al. "Comparing large-scale computational approaches to epidemic modeling: agent-based versus structured metapopulation models." BMC infectious diseases 10.1 (2010): 190.
  4. Alexanderian, Alen, et al. "An age-structured model for the spread of epidemic cholera: Analysis and simulation." Nonlinear Analysis: Real World Applications 12.6 (2011): 3483-3498.
  5. Antulov-Fantulin, Nino, et al. "FastSIR algorithm: A fast algorithm for the simulation of the epidemic spread in large networks by using the susceptible.infected.recovered compartment model." Information Sciences 239 (2013): 226-240.
  6. Apolloni, Andrea, et al. "Computational epidemiology in a connected world." Computer 42.12 (2009): 0083-86.
  7. Bai, Yanping, and Zhen Jin. "Prediction of SARS epidemic by BP neural networks with online prediction strategy." Chaos, Solitons & Fractals 26.2 (2005): 559-569.
  8. Balcan, Duygu, et al. "Modeling the spatial spread of infectious diseases: The GLobal Epidemic and Mobility computational model." Journal of computational science 1.3 (2010): 132-145.
  9. Bansal, Shweta, Bryan T. Grenfell, and Lauren Ancel Meyers. "When individual behaviour matters: homogeneous and network models in epidemiology." Journal of the Royal Society Interface 4.16 (2007): 879-891.
  10. Barrett, Christopher L., et al. "Generation and analysis of large synthetic social contact networks." Winter Simulation Conference. Winter Simulation Conference, 2009.
  11. Barrett, Christopher L., et al. "Interactions among human behavior, social networks, and societal infrastructures: A case study in computational epidemiology." Fundamental Problems in Computing. Springer Netherlands, 2009. 477-507.
  12. Barrett, Christopher L., et al. "EpiSimdemics: an efficient algorithm for simulating the spread of infectious disease over large realistic social networks." Proceedings of the 2008 ACM/IEEE conference on Supercomputing. IEEE Press, 2008.
  13. Barrett, Christopher L., Stephen Eubank, and Madhav V. Marathe. "An Interaction-Based Approach to Computational Epidemiology." AAAI. 2008.
  14. Bisset, Keith R., et al. "High-performance biocomputing for simulating the spread of contagion over large contact networks." BMC genomics 13.Suppl 2 (2012): S3.
  15. Bisset, Keith R., et al. "EpiFast: a fast algorithm for large scale realistic epidemic simulations on distributed memory systems." Proceedings of the 23rd international conference on Supercomputing. ACM, 2009.
  16. Bisset, Keith R., et al. "Modeling interaction between individuals, social networks and public policy to support public health epidemiology." Simulation Conference (WSC), Proceedings of the 2009 Winter. IEEE, 2009.
  17. Cakici, Baki, and Magnus Boman. "A workflow for software development within computational epidemiology." Journal of Computational Science 2.3 (2011): 216-222.
  18. Carpenter, Tim E., Mark C. Thurmond, and Thomas W. Bates. "A simulation model of intraherd transmission of foot and mouth disease with reference to disease spread before and after clinical diagnosis." Journal of Veterinary Diagnostic Investigation 16.1 (2004): 11-16.
  19. Cazelles, Bernard, et al. "Time-dependent spectral analysis of epidemiological time-series with wavelets." Journal of the Royal Society Interface 4.15 (2007): 625-636.
  20. Ciocchetta, Federica, and Jane Hillston. "Bio-PEPA for epidemiological models." Electronic Notes in Theoretical Computer Science 261 (2010): 43-69.
  21. Colizza, Vittoria, et al. "Epidemic modeling in complex realities." Comptes rendus biologies 330.4 (2007): 364-374.
  22. Colizza, Vittoria, and Alessandro Vespignani. "Epidemic modeling in metapopulation systems with heterogeneous coupling pattern: Theory and simulations." Journal of theoretical biology 251.3 (2008): 450-467.
  23. Corley, Courtney D., and Armin R. Mikler. "A computational framework to study public health epidemiology." Bioinformatics, Systems Biology and Intelligent Computing, 2009. IJCBS'09. International Joint Conference on. IEEE, 2009.
  24. Corley, Courtney D., et al. "Dynamic intimate contact social networks and epidemic interventions." International Journal of Functional Informatics and Personalised Medicine 1.2 (2008): 171-188.
  25. Dunham, Jill Bigley. "An Agent-Based Spatially Explicit Epidemiological Model in MASON." Journal of Artificial Societies & Social Simulation 9.1 (2006).
  26. Enszer, Joshua, and Mark Stadtherr. "Verified solution method for population epidemiology models with uncertainty." International Journal of Applied Mathematics and Computer Science 19.3 (2009): 501-512.
  27. Erraguntla, Madhav, et al. "Avian Influenza Datamining Using Environment, Epidemiology, and Etiology Surveillance and Analysis Toolkit (E3SAT)." System Sciences (HICSS), 2010 43rd Hawaii International Conference on. IEEE, 2010.
  28. Eubank, Stephen. "Scalable, efficient epidemiological simulation." Proceedings of the 2002 ACM symposium on Applied computing. ACM, 2002.
  29. Fefferman, N. H., and K. L. Ng. "How disease models in static networks can fail to approximate disease in dynamic networks." Physical Review E 76.3 (2007): 031919.
  30. Ford, Daniel A., James H. Kaufman, and Iris Eiron. "An extensible spatial and temporal epidemiological modelling system." International Journal of Health Geographics 5.1 (2006): 4.
  31. Funk, Sebastian, Marcel Salathéand Vincent AA Jansen. "Modelling the influence of human behaviour on the spread of infectious diseases: a review." Journal of the Royal Society Interface 7.50 (2010): 1247-1256.
  32. Gagliardi, Henrique F., Fabrío AB da Silva, and Domingos Alves. "Automata network simulator applied to the epidemiology of urban dengue fever." Computational Science.ICCS 2006. Springer Berlin Heidelberg, 2006. 297-304.
  33. Ge, Yuanzheng, et al. "Agent-based modeling for influenza h1n1 in an artificial classroom." Systems Engineering Procedia 2 (2011): 94-104.
  34. Grais, R. F., et al. "Modeling the spread of annual influenza epidemics in the US: The potential role of air travel." Health Care Management Science 7.2 (2004): 127-134.
  35. Guo, Jianping, et al. "eMicrob: a grid-based spatial epidemiology application." Computational Science.ICCS 2005. Springer Berlin Heidelberg, 2005. 472-475.
  36. Hethcote, Herbert W. "The mathematics of infectious diseases." SIAM review 42.4 (2000): 599-653.
  37. Holmes, John H., and Jennifer A. Sager. "Rule discovery in epidemiologic surveillance data using EpiXCS: an evolutionary computation approach." Artificial Intelligence in Medicine. Springer Berlin Heidelberg, 2005. 444-452.
  38. Huang, C. Y., Y. S. Tsai, and T. H. Wen. "Simulations for epidemiology and public health education." Journal of Simulation 4.1 (2010): 68-80.
  39. Jombart, T., et al. "Reconstructing disease outbreaks from genetic data: a graph approach." Heredity 106.2 (2011): 383-390.
  40. Khalil, Khaled M., et al. "An agent-based modeling for pandemic influenza in Egypt." Handbook on Decision Making. Springer Berlin Heidelberg, 2012. 205-218.
  41. Levin, Simon A., et al. "Mathematical and computational challenges in population biology and ecosystems science." Science 275.5298 (1997): 334-343.
  42. Marathe, Madhav, and Anil Kumar S. Vullikanti. "Computational Epidemiology." Communications of the ACM 56.7 (2013): 88-96. Print.
  43. Marschner, Ian C., Alexandra C. Gillett, and Rachel L. O.Connell. "Stratified additive Poisson models: computational methods and applications in clinical epidemiology." Computational Statistics & Data Analysis 56.5 (2012): 1115-1130.
  44. Meltzer, Martin I., et al. "Modeling potential responses to smallpox as a bioterrorist weapon." Emerging infectious diseases 7.6 (2001): 959.
  45. Mikler, A.R.; Bravo-Salgado, A.; Corley, C.D., "Global Stochastic Contact Modeling of Infectious Diseases," Bioinformatics, Systems Biology and Intelligent Computing, 2009. IJCBS '09. International Joint Conference on , vol., no., pp.327,330, 3-5 Aug. 2009
  46. Oppong, Joseph R., et al. "From medical geography to computational epidemiology.dynamics of tuberculosis transmission in enclosed spaces." Innovative Internet Community Systems. Springer Berlin Heidelberg, 2006. 189-197.
  47. Patlolla, Padmavathi, et al. "Agent-based simulation tools in computational epidemiology." Innovative Internet Community Systems. Springer Berlin Heidelberg, 2006. 212-223.
  48. Perumalla, Kalyan S., and Sudip K. Seal. "Reversible parallel discrete-event execution of large-scale epidemic outbreak models." Proceedings of the 2010 IEEE Workshop on Principles of Advanced and Distributed Simulation. IEEE Computer Society, 2010.
  49. Pond, Sergei L. Kosakovsky. "Computational analysis of HIV-1 evolution and epidemiology." BIBM Workshops. 2011.
  50. Rahmandad, Hazhir, and John Sterman. "Heterogeneity and network structure in the dynamics of diffusion: Comparing agent-based and differential equation models." Management Science 54.5 (2008): 998-1014.
  51. Rakowski, Franciszek, et al. "Influenza epidemic spread simulation for Poland.a large scale, individual based model study." Physica A: Statistical Mechanics and its Applications 389.16 (2010): 3149-3165.
  52. Reppas, Andreas I., Andreas C. Tsoumanis, and Constantinos I. Siettos. "Coarse-grained bifurcation analysis and detection of criticalities of an individual-based epidemiological network model with infection control." Applied Mathematical Modelling 34.3 (2010): 552-560.
  53. Rue, Hård, and Turid Follestad. "Efficient Computations for Gaussian Markov Random Field Models with two Applications in Spatial Epidemiology." (2004).
  54. Tanaka, Mark M., et al. "Using approximate Bayesian computation to estimate tuberculosis transmission parameters from genotype data." Genetics 173.3 (2006): 1511-1520.
  55. Véz, Mario, Juan Ospina, and Doracelly Hincapié"Tutte polynomials and topological quantum algorithms in social network analysis for epidemiology, bio-surveillance and bio-security." Biosurveillance and Biosecurity. Springer Berlin Heidelberg, 2008. 74-84.
  56. Viljoen, S., Elsje Pienaar, and Hendrik J. Viljoen. "A state-time epidemiology model of tuberculosis: Importance of re-infection." Computational biology and chemistry 36 (2012): 15-22.
  57. Volkova, Svitlana, and William H. Hsu. "Computational knowledge and information management in veterinary epidemiology." Intelligence and Security Informatics (ISI), 2010 IEEE International Conference on. IEEE, 2010.
  58. Vollset, Stein E., Karim F. Hirji, and Robert M. Elashoff. "Fast computation of exact confidence limits for the common odds ratio in a series of 2×2 tables." Journal of the American Statistical Association 86.414 (1991): 404-409.
  59. Zhang, Tianyou, et al. "HPCgen a fast generator of contact networks of large urban cities for epidemiological studies." Computational Intelligence, Modelling and Simulation, 2009. CSSim'09. International Conference on. IEEE, 2009.
  60. Zhong, Shaobo, et al. "The application of space/time analysis tools of GIS in spatial epidemiology: a case study of Hepatitis B in China using GIS." Geoscience and Remote Sensing Symposium, 2005. IGARSS'05. Proceedings. 2005 IEEE International. Vol. 3. IEEE, 2005.